type strain e coli atcc 11775  (DSMZ)

Journal: Microbiology Resource Announcements

Article Title: Complete sequence of the avian pathogenic Escherichia coli strain VTB96933v containing a novel conjugative antimicrobial resistance and virulence IncI1-ST114-ColBM plasmid

doi: 10.1128/mra.00284-25

Figure Lengend Snippet: Genetic map of the 161,786 bp antimicrobial resistance and virulence IncI1-ST114-ColBM plasmid pVTB933v-1 of the avian pathogenic E. coli strain VTB96933v from a broiler with airsacculitis in South Africa. The map includes the size of the plasmid in base pairs, GC content and distribution, and GC skew. Coding sequences (CDSs) are indicated with arrows, including those for the virulence iro cluster in purple, antimicrobial resistance genes in red, tra genes in orange, and colicin operons in green. Virulence and antimicrobial resistance genes and functions: tet (A), tetracycline resistance efflux; aph(3')-Ia , aminoglycoside phosphotransferase for resistance to kanamycin, neomycin, paromomycin, ribostamycin, and lividomycin; merACDEPRT , mercury resistance operons; iroBCDEN : salmochelin siderophore virulence system. Transposase and integrase are indicated in blue and light green, respectively. The map was plotted using Clinker version 0.0.28 and adapted with Adobe Illustrator version 29.3.1.

Article Snippet: Average nucleotide identity (97.09%) to E. coli type strain ATCC 11775 (GCA_003697165.1) was calculated using OrthoANIu ( ).

Techniques: Plasmid Preparation

Journal: Gut Microbes

Article Title: The Mucosally-Adherent Rectal Microbiota Contains Features Unique to Alcohol-Related Cirrhosis

doi: 10.1080/19490976.2021.1987781

Figure Lengend Snippet: Beta-diversity of EtOH vs non-EtOH cirrhosis with linear model of taxonomic changes. (a) Principal Coordinates Analysis via Bray–Curtis distances of rectal swabs by EtOH vs. non-EtOH etiology of cirrhosis ( p = .19; R 2 = 0.03). (b) Principal Coordinates Analysis via Bray–Curtis distances of stool by EtOH vs. non-EtOH etiology of cirrhosis ( p = .31; R 2 = 0.03). (c) Relative abundances of E. coli and Enterobacteriaceae in rectal swabs of EtOH vs. non-EtOH cirrhosis (FDR < 0.05). Gray dotted line indicates separation of high and low E. coli /Enterobacteriaceae groups

Article Snippet: To test this hypothesis, we incubated E. coli type strain ATCC 11775 in vitro in the presence of different physiologic concentrations of ethanol from alcohol consumption.

Techniques:

Journal: Gut Microbes

Article Title: The Mucosally-Adherent Rectal Microbiota Contains Features Unique to Alcohol-Related Cirrhosis

doi: 10.1080/19490976.2021.1987781

Figure Lengend Snippet: E. coli growth in vitro under physiological concentrations of ethanol after alcohol consumption and its oxidative metabolites at pH 6. Growth curve in LB (aerobic, 37°C) with (a) ethanol, (b) acetaldehyde, (c) acetate, and (d) ethanol, acetaldehyde, and acetate alone and in combination. Data expressed as mean ± SEM. N = 3 replicates per condition

Article Snippet: To test this hypothesis, we incubated E. coli type strain ATCC 11775 in vitro in the presence of different physiologic concentrations of ethanol from alcohol consumption.

Techniques: In Vitro